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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12h/k
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 14% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.41 48.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49 α = 90 b = 49 β = 90 c = 194.642 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.36 48.66 99.6 0.061 0.066 0.026 0.999 15.5 10.9 59380
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.36 1.38 95.4 1.175 1.421 0.776 0.53 1.1 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.36 41.496 59292 2961 99.457 0.171 0.1689 0.1791 0.2021 0.2054 25.059
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.172 0.086 0.172 -0.557
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.262 r_lrange_it 18.513 r_lrange_other 18.004 r_dihedral_angle_6_deg 15.229 r_mcangle_it 13.523 r_mcangle_other 13.522 r_scangle_it 11.68 r_scangle_other 11.677 r_mcbond_it 10.33 r_mcbond_other 10.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.262 r_lrange_it 18.513 r_lrange_other 18.004 r_dihedral_angle_6_deg 15.229 r_mcangle_it 13.523 r_mcangle_other 13.522 r_scangle_it 11.68 r_scangle_other 11.677 r_mcbond_it 10.33 r_mcbond_other 10.315 r_dihedral_angle_3_deg 10.034 r_scbond_it 8.34 r_scbond_other 8.336 r_dihedral_angle_1_deg 8.21 r_rigid_bond_restr 4.494 r_angle_refined_deg 1.762 r_angle_other_deg 0.599 r_symmetry_xyhbond_nbd_refined 0.232 r_nbd_refined 0.207 r_symmetry_nbd_other 0.196 r_symmetry_nbd_refined 0.178 r_nbtor_refined 0.176 r_nbd_other 0.159 r_xyhbond_nbd_refined 0.144 r_ncsr_local_group_1 0.12 r_chiral_restr 0.094 r_symmetry_nbtor_other 0.091 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1867 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing