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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12c/i
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 14% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.41 48.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.078 α = 90 b = 49.078 β = 90 c = 194.169 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 48.54 100 0.037 0.041 0.017 1 24.1 10.6 40705
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.58 100 1.499 1.65 0.685 0.548 1.6 11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 42.539 40628 1978 99.978 0.203 0.2004 0.2449 0.2505 36.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.828 -0.414 -0.828 2.685
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.297 r_dihedral_angle_6_deg 14.13 r_lrange_it 13.056 r_lrange_other 12.982 r_dihedral_angle_3_deg 12.005 r_dihedral_angle_1_deg 8.689 r_scangle_it 8.642 r_scangle_other 8.639 r_mcangle_it 8.634 r_mcangle_other 8.632
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.297 r_dihedral_angle_6_deg 14.13 r_lrange_it 13.056 r_lrange_other 12.982 r_dihedral_angle_3_deg 12.005 r_dihedral_angle_1_deg 8.689 r_scangle_it 8.642 r_scangle_other 8.639 r_mcangle_it 8.634 r_mcangle_other 8.632 r_scbond_it 6.356 r_scbond_other 6.353 r_mcbond_it 6.228 r_mcbond_other 6.226 r_rigid_bond_restr 4.589 r_angle_refined_deg 1.771 r_angle_other_deg 0.597 r_symmetry_nbd_refined 0.394 r_symmetry_xyhbond_nbd_refined 0.262 r_nbd_other 0.251 r_symmetry_nbd_other 0.198 r_nbd_refined 0.197 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.17 r_ncsr_local_group_1 0.112 r_chiral_restr 0.095 r_symmetry_nbtor_other 0.089 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1878 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing