☰ Navigation Tabs
The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12c/j
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 14% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.41 48.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.872 α = 90 b = 48.872 β = 90 c = 195.79 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 48.95 100 0.055 0.061 0.025 1 20 10.6 28521
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.78 100 1.514 1.663 0.682 0.625 1.6 11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 42.36 28449 1378 99.961 0.212 0.2094 0.2101 0.2543 0.2559 40.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.404 -0.202 -0.404 1.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.338 r_dihedral_angle_6_deg 16.29 r_dihedral_angle_3_deg 12.968 r_dihedral_angle_1_deg 8.375 r_lrange_other 6.611 r_lrange_it 6.604 r_scangle_it 4.948 r_scangle_other 4.947 r_mcangle_other 3.739 r_mcangle_it 3.738
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.338 r_dihedral_angle_6_deg 16.29 r_dihedral_angle_3_deg 12.968 r_dihedral_angle_1_deg 8.375 r_lrange_other 6.611 r_lrange_it 6.604 r_scangle_it 4.948 r_scangle_other 4.947 r_mcangle_other 3.739 r_mcangle_it 3.738 r_scbond_it 3.584 r_scbond_other 3.582 r_mcbond_it 2.936 r_mcbond_other 2.93 r_angle_refined_deg 2.134 r_angle_other_deg 0.721 r_symmetry_xyhbond_nbd_refined 0.217 r_nbd_refined 0.209 r_symmetry_nbd_other 0.194 r_nbtor_refined 0.181 r_nbd_other 0.175 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.112 r_ncsr_local_group_1 0.104 r_symmetry_nbd_refined 0.099 r_symmetry_nbtor_other 0.091 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1888 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing