☰ Navigation Tabs
Crystal structure of the human METTL3-METTL14 in complex with small molecule inhibitor Compound 56
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7O2I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.2 M calcium chloride, 0.1 M Tris:HCl pH 8.0, 18% (w/v) PEG 4000, 20C, sitting
drop, protein:precipitant solution ratio = 1:1
Crystal Properties Matthews coefficient Solvent content 2.47 50.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.191 α = 90 b = 64.191 β = 90 c = 225.132 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97856 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 45.03 100 0.997 8.8 11.7 38278
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 0.96
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 44.71 38278 2043 99.95 0.19753 0.19502 0.24343 0.2339 RANDOM 34.835
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.05 -0.11 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.439 r_dihedral_angle_3_deg 16.464 r_dihedral_angle_4_deg 16.053 r_long_range_B_refined 7.69 r_long_range_B_other 7.674 r_dihedral_angle_1_deg 7.533 r_mcangle_it 4.996 r_mcangle_other 4.995 r_scangle_other 4.838 r_mcbond_other 3.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.439 r_dihedral_angle_3_deg 16.464 r_dihedral_angle_4_deg 16.053 r_long_range_B_refined 7.69 r_long_range_B_other 7.674 r_dihedral_angle_1_deg 7.533 r_mcangle_it 4.996 r_mcangle_other 4.995 r_scangle_other 4.838 r_mcbond_other 3.141 r_mcbond_it 3.14 r_scbond_it 3.064 r_scbond_other 3.056 r_angle_refined_deg 1.545 r_angle_other_deg 1.257 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3819 Nucleic Acid Atoms Solvent Atoms 311 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing