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Wild-type EGFR in covalent complex with Poziotinib analogue
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ITZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 25mM TRIS-HCL pH8.0, 150mM NaCl, 5% Glycerol, 1mM TCEP, 100mM HEPES pH 7.4, 40% PEG400
Crystal Properties Matthews coefficient Solvent content 3.45 64.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.823 α = 90 b = 145.823 β = 90 c = 145.823 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.898423 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 59.603 100 0.101 1 24 41 35412
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.04 100 5.43 0.396
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.991 59.603 35411 1773 99.992 0.189 0.1863 0.2332 0.2112 66.126
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_2_deg 31.94 r_dihedral_angle_6_deg 15.308 r_lrange_it 14.266 r_lrange_other 14.265 r_dihedral_angle_3_deg 14.234 r_dihedral_angle_2_deg 12.921 r_scangle_it 10.052 r_scangle_other 10.049 r_mcangle_it 9.318 r_mcangle_other 9.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_2_deg 31.94 r_dihedral_angle_6_deg 15.308 r_lrange_it 14.266 r_lrange_other 14.265 r_dihedral_angle_3_deg 14.234 r_dihedral_angle_2_deg 12.921 r_scangle_it 10.052 r_scangle_other 10.049 r_mcangle_it 9.318 r_mcangle_other 9.315 r_dihedral_angle_1_deg 7.179 r_scbond_it 6.771 r_scbond_other 6.769 r_mcbond_it 6.456 r_mcbond_other 6.456 r_angle_refined_deg 1.723 r_angle_other_deg 0.586 r_xyhbond_nbd_refined 0.286 r_symmetry_xyhbond_nbd_refined 0.255 r_nbd_refined 0.229 r_symmetry_nbd_other 0.197 r_nbtor_refined 0.185 r_nbd_other 0.18 r_symmetry_nbd_refined 0.174 r_chiral_restr 0.087 r_symmetry_nbtor_other 0.082 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2593 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement xia2 data reduction pointless data scaling PHASER phasing