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Influenza polymerase A C-terminal domain of PA subunit with stapled peptide inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7ZPY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291.15 0.1 M MOPS/HEPES; 15% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.57 52.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.019 α = 90 b = 118.797 β = 90 c = 123.848 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-09-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91840 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.16 50 99.9 0.126 0.126 0.999 15.83 13.12 30962
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.16 2.29 3.061 3.18 0.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.16 42.9 29477 1550 99.93 0.22215 0.21931 0.2201 0.27683 0.2167 RANDOM 69.074
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.62 -1.38 -1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.549 r_long_range_B_other 11.999 r_long_range_B_refined 11.997 r_dihedral_angle_2_deg 10.675 r_scangle_other 9.459 r_mcangle_it 8.077 r_mcangle_other 8.075 r_dihedral_angle_1_deg 6.593 r_scbond_it 6.345 r_scbond_other 6.344
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.549 r_long_range_B_other 11.999 r_long_range_B_refined 11.997 r_dihedral_angle_2_deg 10.675 r_scangle_other 9.459 r_mcangle_it 8.077 r_mcangle_other 8.075 r_dihedral_angle_1_deg 6.593 r_scbond_it 6.345 r_scbond_other 6.344 r_mcbond_it 5.587 r_mcbond_other 5.578 r_angle_refined_deg 1.442 r_angle_other_deg 0.498 r_chiral_restr 0.067 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3360 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling XDS data reduction MOLREP phasing