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Poliovirus 3C protease in H32 spacegroup
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L1N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 Shotgun ECO screen, well B9
1.6M Sodium citrate tribasic dihydrate
Crystal Properties Matthews coefficient Solvent content 2.93 57.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.734 α = 90 b = 122.734 β = 90 c = 158.698 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2024-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.37 63.585 99.91 1 19.1 20.6 18923
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.37 2.41 0.294
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.37 63.585 18906 923 99.989 0.196 0.1931 0.1938 0.2579 0.2574 80.791
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.298 -0.149 -0.298 0.968
RMS Deviations Key Refinement Restraint Deviation r_lrange_other 20.228 r_lrange_it 20.217 r_dihedral_angle_2_deg 20.089 r_dihedral_angle_3_deg 19.072 r_scangle_it 17.891 r_scangle_other 17.887 r_mcangle_it 15.686 r_mcangle_other 15.682 r_dihedral_angle_6_deg 14.346 r_scbond_it 13.605
RMS Deviations Key Refinement Restraint Deviation r_lrange_other 20.228 r_lrange_it 20.217 r_dihedral_angle_2_deg 20.089 r_dihedral_angle_3_deg 19.072 r_scangle_it 17.891 r_scangle_other 17.887 r_mcangle_it 15.686 r_mcangle_other 15.682 r_dihedral_angle_6_deg 14.346 r_scbond_it 13.605 r_scbond_other 13.603 r_mcbond_it 12.315 r_mcbond_other 12.307 r_dihedral_angle_1_deg 9.59 r_angle_refined_deg 2.67 r_angle_other_deg 0.996 r_nbd_refined 0.207 r_ncsr_local_group_1 0.188 r_symmetry_nbd_other 0.183 r_nbtor_refined 0.174 r_symmetry_nbd_refined 0.162 r_xyhbond_nbd_refined 0.157 r_nbd_other 0.152 r_symmetry_xyhbond_nbd_other 0.133 r_chiral_restr 0.124 r_symmetry_nbtor_other 0.09 r_symmetry_xyhbond_nbd_refined 0.032 r_bond_refined_d 0.013 r_gen_planes_refined 0.013 r_chiral_restr_other 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2719 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling REFMAC phasing