9FO8 | pdb_00009fo8

5_SL5b_GC of the 5_SL5 RNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY0.51 mM [U-100% 13C; U-100% 15N] RNA (29-MER), 50 mM potassium chloride, 25 mM potassium phosphate95% H2O/5% D2O25 mM6.21 Pa277Bruker AVANCE III 800
22D 1H-1H NOESY xfilter0.51 mM [U-100% 13C; U-100% 15N] RNA (29-MER), 50 mM potassium chloride, 25 mM potassium phosphate95% H2O/5% D2O25 mM6.21 Pa277Bruker AVANCE III 800
32D 1H-13C HSQC0.51 mM [U-100% 13C; U-100% 15N] RNA (29-MER), 50 mM potassium chloride, 25 mM potassium phosphate95% H2O/5% D2O25 mM6.21 Pa277Bruker AVANCE III 800
62D 1H-13C HSQC aromatic0.51 mM [U-100% 13C; U-100% 15N] RNA (29-MER), 50 mM potassium chloride, 25 mM potassium phosphate95% H2O/5% D2O25 mM6.21 Pa277Bruker AVANCE III 800
52D IPAP 1H-13C HSQC0.2 mM [U-100% 13C; U-100% 15N] RNA (29-MER), 50 mM potassium chloride, 25 mM potassium phosphate95% H2O/5% D2O25 mM6.21 Pa277Bruker AVANCE NEO 600
42D IPAP 1H-13C HSQC aromatic0.2 mM [U-100% 13C; U-100% 15N] RNA (29-MER), 50 mM potassium chloride, 25 mM potassium phosphate95% H2O/5% D2O25 mM6.21 Pa277Bruker AVANCE NEO 600
82D IPAP 1H-13C HSQC0.2 mM [U-100% 13C; U-100% 15N] RNA (29-MER), 50 mM potassium chloride, 25 mM potassium phosphate, 10 mg/mL Pf1 phage95% H2O/5% D2O25 mM6.21 Pa277Bruker AVANCE NEO 600
72D IPAP 1H-13C HSQC aromatic0.2 mM [U-100% 13C; U-100% 15N] RNA (29-MER), 50 mM potassium chloride, 25 mM potassium phosphate, 10 mg/mL Pf1 phage95% H2O/5% D2O25 mM6.21 Pa277Bruker AVANCE NEO 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III800
2BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
nawater refinementARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentNMRFAM-SPARKY3.190Lee W, Tonelli M, Markley JL
2structure calculationCNSBrunger, Adams, Clore, Gros, Nilges and Read
3refinementARIALinge, O'Donoghue and Nilges
4processingTopSpin4.1.4Bruker Biospin