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Full-length crystal structure of human Fascin 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LLP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0,1M HEPES pH 7.5, 20% polyethylene glycol (PEG) 4000, 2% propanol
Crystal Properties Matthews coefficient Solvent content 2.23 44.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.566 α = 90 b = 70.804 β = 92.78 c = 122.21 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.9792 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 43.42 99.16 0.106 4.4 6.7 47005
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.25 0.541
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 43.42 47005 2399 99.16 0.23747 0.23397 0.2369 0.30435 0.308 RANDOM 48.241
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.66 0.75 -0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.823 r_long_range_B_refined 9.795 r_long_range_B_other 9.789 r_dihedral_angle_2_deg 9.537 r_dihedral_angle_1_deg 7.847 r_scangle_other 6.011 r_mcangle_it 5.944 r_mcangle_other 5.943 r_mcbond_it 3.872 r_mcbond_other 3.872
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.823 r_long_range_B_refined 9.795 r_long_range_B_other 9.789 r_dihedral_angle_2_deg 9.537 r_dihedral_angle_1_deg 7.847 r_scangle_other 6.011 r_mcangle_it 5.944 r_mcangle_other 5.943 r_mcbond_it 3.872 r_mcbond_other 3.872 r_scbond_it 3.818 r_scbond_other 3.818 r_angle_refined_deg 1.701 r_angle_other_deg 0.628 r_chiral_restr 0.095 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7594 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing