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Crystal structure of human Haspin (GSG2) kinase bound to MU1959
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 278 60% MPD, 0.1M MMT pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.86 57.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.59 α = 90 b = 77.993 β = 90 c = 87.098 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.99999 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 44.37 98.9 0.999 14.2 13.4 40168
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.89 0.762 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 44.37 38175 1933 98.81 0.17625 0.17496 0.1878 0.20198 0.2108 RANDOM 31.859
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.74 -0.18 -2.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.82 r_dihedral_angle_2_deg 8.378 r_long_range_B_refined 7.13 r_long_range_B_other 7.129 r_dihedral_angle_1_deg 6.486 r_scangle_other 5.514 r_scbond_it 3.536 r_scbond_other 3.535 r_mcangle_it 3.003 r_mcangle_other 3.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.82 r_dihedral_angle_2_deg 8.378 r_long_range_B_refined 7.13 r_long_range_B_other 7.129 r_dihedral_angle_1_deg 6.486 r_scangle_other 5.514 r_scbond_it 3.536 r_scbond_other 3.535 r_mcangle_it 3.003 r_mcangle_other 3.003 r_mcbond_it 2.145 r_mcbond_other 2.144 r_angle_refined_deg 1.336 r_angle_other_deg 0.449 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2619 Nucleic Acid Atoms Solvent Atoms 213 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction MOLREP phasing