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Crystal structure of human Haspin (GSG2) kinase bound to MU2181
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 55-65% MPD, 0.1M SPG 6.5
Crystal Properties Matthews coefficient Solvent content 3.06 59.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.244 α = 90 b = 77.134 β = 90 c = 84.682 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-01-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.999990 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 45.71 99.3 0.999 9.2 6.6 11504
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.08 0.818
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 45.71 10903 552 99.05 0.21403 0.2123 0.2224 0.24678 0.2457 RANDOM 90.624
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.5 -2.89 -4.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.727 r_long_range_B_refined 10.405 r_long_range_B_other 10.403 r_scangle_other 8.133 r_dihedral_angle_1_deg 8.027 r_mcangle_it 7.59 r_mcangle_other 7.59 r_dihedral_angle_2_deg 6.314 r_scbond_it 5.708 r_scbond_other 5.562
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.727 r_long_range_B_refined 10.405 r_long_range_B_other 10.403 r_scangle_other 8.133 r_dihedral_angle_1_deg 8.027 r_mcangle_it 7.59 r_mcangle_other 7.59 r_dihedral_angle_2_deg 6.314 r_scbond_it 5.708 r_scbond_other 5.562 r_mcbond_it 4.84 r_mcbond_other 4.838 r_angle_refined_deg 1.405 r_angle_other_deg 0.475 r_chiral_restr 0.061 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2551 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction MOLREP phasing