☰ Navigation Tabs
compound 2a bound KMT9 structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6H1D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.2 M Na3Citrate, 0.1M Tris 7.5
Crystal Properties Matthews coefficient Solvent content 3.15 60.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.103 α = 90 b = 110.103 β = 90 c = 129.819 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 PIXEL DECTRIS PILATUS 2M-F 2019-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 47.68 99.1 0.18 0.184 0.04 1 21.3 39.7 61843
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.62 0.543 38.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.592 47.68 61819 3074 98.863 0.15 0.148 0.153 0.1916 0.1914 25.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.215 -0.107 -0.215 0.696
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.951 r_dihedral_angle_3_deg 14.837 r_scangle_it 8.355 r_scangle_other 8.353 r_lrange_it 7.877 r_lrange_other 7.832 r_scbond_it 7.363 r_scbond_other 7.36 r_dihedral_angle_1_deg 6.331 r_mcangle_other 5.913
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.951 r_dihedral_angle_3_deg 14.837 r_scangle_it 8.355 r_scangle_other 8.353 r_lrange_it 7.877 r_lrange_other 7.832 r_scbond_it 7.363 r_scbond_other 7.36 r_dihedral_angle_1_deg 6.331 r_mcangle_other 5.913 r_mcangle_it 5.879 r_rigid_bond_restr 5.307 r_mcbond_it 5.269 r_mcbond_other 5.243 r_dihedral_angle_2_deg 4.916 r_angle_refined_deg 1.617 r_angle_other_deg 0.556 r_symmetry_xyhbond_nbd_refined 0.262 r_nbd_refined 0.24 r_symmetry_nbd_refined 0.196 r_nbd_other 0.195 r_symmetry_nbd_other 0.19 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.084 r_symmetry_nbtor_other 0.077 r_xyhbond_nbd_other 0.029 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2413 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing