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LSSmOrange (P1) - Directionality of Optical Properties of Fluorescent Proteins
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4Q7R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 291 100mM MES,
5 % w/v Polyethylene glycol 8000
40 % v/v 2-Methyl-2,4-pentanediol
Crystal Properties Matthews coefficient Solvent content 2.31 46.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.955 α = 95.69 b = 51.536 β = 90.01 c = 53.892 γ = 105.68
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL RIGAKU HyPix-6000HE 2022-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.541870
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 91.4 0.081 0.094 0.046 0.996 10 3.7 33363
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 52.6 0.407 0.537 0.348 0.755 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 26.32 31726 1608 91.28 0.2063 0.20353 0.2146 0.26201 0.2707 RANDOM 22.198
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.55 0.71 0.06 1.48 -0.41 0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.19 r_dihedral_angle_4_deg 20.13 r_dihedral_angle_3_deg 16.182 r_dihedral_angle_1_deg 7.803 r_long_range_B_refined 5.859 r_long_range_B_other 5.827 r_scangle_other 4.532 r_scbond_it 2.931 r_scbond_other 2.931 r_mcangle_it 2.626
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.19 r_dihedral_angle_4_deg 20.13 r_dihedral_angle_3_deg 16.182 r_dihedral_angle_1_deg 7.803 r_long_range_B_refined 5.859 r_long_range_B_other 5.827 r_scangle_other 4.532 r_scbond_it 2.931 r_scbond_other 2.931 r_mcangle_it 2.626 r_mcangle_other 2.625 r_angle_refined_deg 1.897 r_mcbond_it 1.883 r_mcbond_other 1.883 r_angle_other_deg 1.357 r_chiral_restr 0.082 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3435 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Aimless data scaling CrysalisPro data reduction MOLREP phasing