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Gcase in complex with small molecule inhibitor 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M KSCN
25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.15 42.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.878 α = 90 b = 74.481 β = 102.63 c = 68.359 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X1A 1.00003 NSLS X1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.389 66.71 86.7 0.052 13.5 3.4 64808
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.389 1.558 0.82
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.4 66.71 62705 3178 65.26 0.1498 0.14812 0.1502 0.1831 0.1853 RANDOM 23.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.07 -0.53 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.685 r_dihedral_angle_4_deg 14.064 r_dihedral_angle_3_deg 12.8 r_dihedral_angle_1_deg 11.27 r_long_range_B_refined 5.193 r_long_range_B_other 5.052 r_scbond_it 2.737 r_scbond_other 2.737 r_angle_refined_deg 1.515 r_mcbond_it 1.269
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.685 r_dihedral_angle_4_deg 14.064 r_dihedral_angle_3_deg 12.8 r_dihedral_angle_1_deg 11.27 r_long_range_B_refined 5.193 r_long_range_B_other 5.052 r_scbond_it 2.737 r_scbond_other 2.737 r_angle_refined_deg 1.515 r_mcbond_it 1.269 r_mcbond_other 1.269 r_angle_other_deg 0.529 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3930 Nucleic Acid Atoms Solvent Atoms 627 Heterogen Atoms 121
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing