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Human adenovirus type 36 fiber knob in complex with 4-O-acetyl-3'-sialyllactose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UXE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 277 25% PEG 3350, 185 mM NH4Ac, 0.1 M Bis-Tris pH 5.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.129 α = 90 b = 98.644 β = 90 c = 99.826 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 50 98.8 0.999 14 6.8 133755 25.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.67 94.3 0.651 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.5735397337 45.50728515 1.3601203312 133755 6671 98.8434821165 0.156703663775 0.155110951343 0.1549 0.187024423223 0.1854 20.7588548491
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.1716505067 f_angle_d 1.24007137757 f_chiral_restr 0.0769103769955 f_bond_d 0.0116399935378 f_plane_restr 0.00799211881714
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4331 Nucleic Acid Atoms Solvent Atoms 463 Heterogen Atoms 83
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling MOLREP phasing