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SARS-CoV-2 Nucleocapsid N-terminal domain (NTD) mutant S105I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 22% PEG 3350
200mM Zinc Acetate dihydrate
Crystal Properties Matthews coefficient Solvent content 3.22 61.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.616 α = 90 b = 58.616 β = 90 c = 111.588 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 41.45 99.3 0.999 15.8 12.4 13840
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 0.938 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2 41.45 13760 685 99.761 0.243 0.2411 0.2414 0.2733 0.2753 RANDOM 81.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.817 2.817 -5.633
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.137 r_dihedral_angle_3_deg 14.337 r_lrange_it 10.054 r_lrange_other 10.054 r_scangle_it 7.983 r_scangle_other 7.978 r_dihedral_angle_2_deg 7.173 r_mcangle_it 6.427 r_mcangle_other 6.423 r_scbond_it 6.049
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.137 r_dihedral_angle_3_deg 14.337 r_lrange_it 10.054 r_lrange_other 10.054 r_scangle_it 7.983 r_scangle_other 7.978 r_dihedral_angle_2_deg 7.173 r_mcangle_it 6.427 r_mcangle_other 6.423 r_scbond_it 6.049 r_scbond_other 6.047 r_mcbond_it 4.78 r_mcbond_other 4.779 r_dihedral_angle_1_deg 4.716 r_angle_refined_deg 2.561 r_angle_other_deg 0.88 r_symmetry_nbd_refined 0.337 r_nbd_refined 0.199 r_nbd_other 0.178 r_nbtor_refined 0.174 r_symmetry_nbd_other 0.169 r_xyhbond_nbd_refined 0.126 r_symmetry_xyhbond_nbd_refined 0.105 r_chiral_restr 0.103 r_symmetry_nbtor_other 0.078 r_symmetry_metal_ion_refined 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_ext_dist_refined_b
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1046 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Coot model building BUCCANEER model building Aimless data scaling pointless data scaling STARANISO data scaling autoPROC data reduction XDS data reduction CRANK2 phasing