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Human carbonic anhydrase XII with 3-(cyclooctylamino)-2,6-difluoro-5-((4-hydroxybutyl)amino)-4-((3-hydroxypropyl)sulfonyl)benzenesulfonamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JD0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 Ammonium Citrate pH7.0 0.1M; Ammonium Sulfate 0.2M; PEG4000 26%
Crystal Properties Matthews coefficient Solvent content 2.11 41.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.501 α = 90 b = 74.116 β = 108.83 c = 91.632 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.90500 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.21 86.73 97 0.04 0.043 0.016 1 18.6 6.6 290166 13.904
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.21 1.23 46.9 0.538 0.698 0.437 0.719 1.4 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.21 86.73 261008 29100 97.08 0.13996 0.13691 0.149 0.16764 0.173 RANDOM 23.266
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 0.16 -0.52 0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.481 r_dihedral_angle_4_deg 13.98 r_dihedral_angle_3_deg 12.132 r_dihedral_angle_1_deg 7.052 r_long_range_B_refined 4.542 r_rigid_bond_restr 4.503 r_scbond_it 3.803 r_mcangle_it 2.936 r_mcbond_it 2.423 r_angle_refined_deg 1.561
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.481 r_dihedral_angle_4_deg 13.98 r_dihedral_angle_3_deg 12.132 r_dihedral_angle_1_deg 7.052 r_long_range_B_refined 4.542 r_rigid_bond_restr 4.503 r_scbond_it 3.803 r_mcangle_it 2.936 r_mcbond_it 2.423 r_angle_refined_deg 1.561 r_chiral_restr 0.104 r_gen_planes_refined 0.011 r_bond_refined_d 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8395 Nucleic Acid Atoms Solvent Atoms 1125 Heterogen Atoms 212
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing