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A-SPECTRIN SH3 DOMAIN V9L, A11V, L31V, V44I, V53I MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SHG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 2.0M Ammonium Sulfate and 0.1M TRIS pH: 6.5
Crystal Properties Matthews coefficient Solvent content 2.41 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.007 α = 90 b = 42.857 β = 90 c = 49.68 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 6M 2022-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97918 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.13 32.451 99 0.05 0.999 13.7 6 26796
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.13 1.149 1.41 0.571 0.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.13 32.451 26793 1320 98.988 0.152 0.151 0.1522 0.1688 0.1693 16.711
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.469 0.982 -0.513
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.17 r_dihedral_angle_4_deg 25.063 r_dihedral_angle_3_deg 16.207 r_dihedral_angle_1_deg 5.699 r_scangle_it 5.598 r_rigid_bond_restr 5.259 r_lrange_it 5.061 r_scangle_other 4.758 r_scbond_it 4.718 r_lrange_other 4.609
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.17 r_dihedral_angle_4_deg 25.063 r_dihedral_angle_3_deg 16.207 r_dihedral_angle_1_deg 5.699 r_scangle_it 5.598 r_rigid_bond_restr 5.259 r_lrange_it 5.061 r_scangle_other 4.758 r_scbond_it 4.718 r_lrange_other 4.609 r_scbond_other 4.303 r_mcbond_it 3.271 r_mcangle_other 3.26 r_mcangle_it 3.258 r_mcbond_other 2.699 r_angle_refined_deg 2.193 r_angle_other_deg 1.491 r_xyhbond_nbd_refined 0.22 r_nbd_refined 0.213 r_symmetry_xyhbond_nbd_refined 0.195 r_symmetry_nbd_other 0.188 r_nbtor_refined 0.176 r_symmetry_nbd_refined 0.164 r_chiral_restr 0.115 r_nbd_other 0.112 r_symmetry_nbtor_other 0.091 r_symmetry_xyhbond_nbd_other 0.044 r_bond_refined_d 0.022 r_gen_planes_refined 0.013 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 487 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing