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The FK1 domain of FKBP51 in complex with SAFit-analog 23a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CCA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5 10% ethylene glycol
Crystal Properties Matthews coefficient Solvent content 2.44 49.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.027 α = 90 b = 49.027 β = 90 c = 196.819 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 42.495 100 0.088 0.096 0.038 0.999 14.2 11.5 19549
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 0.916 1.006 0.412 0.826 11.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 42.495 19485 963 99.933 0.214 0.2117 0.2119 0.2502 0.2489 40.664
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.718 -0.359 -0.718 2.328
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.429 r_dihedral_angle_6_deg 13.779 r_dihedral_angle_3_deg 12.452 r_dihedral_angle_1_deg 8.562 r_lrange_other 6.144 r_lrange_it 6.143 r_scangle_it 4.343 r_scangle_other 4.341 r_mcangle_other 4.097 r_mcangle_it 4.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.429 r_dihedral_angle_6_deg 13.779 r_dihedral_angle_3_deg 12.452 r_dihedral_angle_1_deg 8.562 r_lrange_other 6.144 r_lrange_it 6.143 r_scangle_it 4.343 r_scangle_other 4.341 r_mcangle_other 4.097 r_mcangle_it 4.095 r_scbond_it 3.039 r_scbond_other 3.038 r_mcbond_it 3.012 r_mcbond_other 2.997 r_angle_refined_deg 1.84 r_angle_other_deg 0.632 r_nbd_refined 0.194 r_symmetry_nbd_other 0.193 r_xyhbond_nbd_refined 0.181 r_nbtor_refined 0.178 r_symmetry_nbd_refined 0.155 r_symmetry_xyhbond_nbd_refined 0.122 r_nbd_other 0.097 r_ncsr_local_group_1 0.097 r_chiral_restr 0.091 r_symmetry_nbtor_other 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_symmetry_xyhbond_nbd_other 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1856 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing