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The FK1 domain of FKBP51 in complex with SAFit-analog 23c
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CCA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 14% PEG3350, 0.2M sodium thiocyanate, 0.1M HEPES-NaOH pH 7.5 10% ethylene glycol
Crystal Properties Matthews coefficient Solvent content 2.3 46.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.439 α = 90 b = 48.439 β = 90 c = 190.16 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 47.54 94.1 0.09 0.103 0.049 0.996 8.6 4.9 16731
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.07 1.411 1.663 0.852 0.324 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.022 40.998 16672 831 93.616 0.266 0.264 0.2611 0.307 0.3059 37.001
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.427 -0.213 -0.427 1.385
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.412 r_dihedral_angle_3_deg 12.165 r_dihedral_angle_1_deg 8.833 r_lrange_it 5.083 r_lrange_other 5.082 r_mcangle_it 3.717 r_mcangle_other 3.716 r_dihedral_angle_2_deg 3.586 r_scangle_it 3.118 r_scangle_other 3.117
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.412 r_dihedral_angle_3_deg 12.165 r_dihedral_angle_1_deg 8.833 r_lrange_it 5.083 r_lrange_other 5.082 r_mcangle_it 3.717 r_mcangle_other 3.716 r_dihedral_angle_2_deg 3.586 r_scangle_it 3.118 r_scangle_other 3.117 r_mcbond_it 2.446 r_mcbond_other 2.445 r_scbond_it 2.097 r_scbond_other 2.096 r_angle_refined_deg 1.696 r_chiral_restr_other 1.37 r_angle_other_deg 1.22 r_nbd_other 0.216 r_symmetry_nbd_refined 0.211 r_symmetry_nbd_other 0.203 r_nbd_refined 0.201 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.163 r_ncsr_local_group_1 0.101 r_symmetry_nbtor_other 0.086 r_chiral_restr 0.073 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1747 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing