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The FK1 domain of FKBP51 in complex with SAFit-analog 24e
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CCA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16% PEG3350, 0.2M sodium thiocyanate, 0.1M HEPES-NaOH pH 7.5 10% ethylene glycol
Crystal Properties Matthews coefficient Solvent content 2.41 48.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.896 α = 90 b = 48.896 β = 90 c = 195.511 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 42.35 100 0.053 0.058 0.024 0.999 22.6 10.5 19342
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 0.59 0.647 0.265 0.879 11.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 41.42 19281 1020 99.959 0.241 0.2393 0.24 0.2772 0.278 40.351
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.593 -0.297 -0.593 1.924
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.784 r_dihedral_angle_3_deg 11.961 r_dihedral_angle_1_deg 8.318 r_lrange_other 5.203 r_lrange_it 5.199 r_scangle_it 3.533 r_scangle_other 3.533 r_dihedral_angle_2_deg 3.306 r_mcangle_it 3.303 r_mcangle_other 3.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.784 r_dihedral_angle_3_deg 11.961 r_dihedral_angle_1_deg 8.318 r_lrange_other 5.203 r_lrange_it 5.199 r_scangle_it 3.533 r_scangle_other 3.533 r_dihedral_angle_2_deg 3.306 r_mcangle_it 3.303 r_mcangle_other 3.302 r_scbond_it 2.427 r_scbond_other 2.425 r_mcbond_it 2.36 r_mcbond_other 2.356 r_angle_refined_deg 1.643 r_chiral_restr_other 1.424 r_angle_other_deg 1.301 r_nbd_refined 0.201 r_symmetry_nbd_other 0.201 r_nbtor_refined 0.177 r_nbd_other 0.144 r_symmetry_nbd_refined 0.131 r_xyhbond_nbd_refined 0.126 r_ncsr_local_group_1 0.097 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.076 r_symmetry_xyhbond_nbd_refined 0.048 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1773 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing