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WWP2 WW2-2,3-linker-HECT (WWP2-LH)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5TJ8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 289 100 mM MMT pH 6.0, 25 % PEG1500
Crystal Properties Matthews coefficient Solvent content 2.07 40.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.009 α = 90 b = 90.27 β = 90 c = 111.177 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2023-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9795 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.046 70.079 99.5 0.19 0.205 0.075 0.994 6.9 6.7 28618 33.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.046 5.552 99.9 0.486
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 70.079 28369 1357 99.272 0.216 0.2134 0.2133 0.2749 0.275 51.688
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.44 3.221 -0.781
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.128 r_dihedral_angle_6_deg 15.622 r_lrange_other 13.083 r_lrange_it 13.067 r_scangle_it 10.053 r_scangle_other 10.052 r_dihedral_angle_2_deg 9.95 r_mcangle_it 8.775 r_mcangle_other 8.773 r_dihedral_angle_1_deg 7.945
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.128 r_dihedral_angle_6_deg 15.622 r_lrange_other 13.083 r_lrange_it 13.067 r_scangle_it 10.053 r_scangle_other 10.052 r_dihedral_angle_2_deg 9.95 r_mcangle_it 8.775 r_mcangle_other 8.773 r_dihedral_angle_1_deg 7.945 r_scbond_it 6.785 r_scbond_other 6.784 r_mcbond_it 6.399 r_mcbond_other 6.396 r_angle_refined_deg 2.222 r_angle_other_deg 1.011 r_nbd_refined 0.186 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.138 r_symmetry_nbd_other 0.137 r_chiral_restr 0.123 r_nbd_other 0.118 r_symmetry_nbd_refined 0.109 r_symmetry_nbtor_other 0.07 r_symmetry_xyhbond_nbd_refined 0.057 r_bond_refined_d 0.011 r_gen_planes_refined 0.011 r_bond_other_d 0.004 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3518 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing