☰ Navigation Tabs
Crystal structure of human Casein Kinase II subunit alpha (CK2a1) in complex with allosteric ligand FGC3330
Serial Crystallography (SX)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 0.1 M bis-tris pH 5.5
23-26% (v/v) PEG 3350
0.2 M ammonia sulphate
Crystal Properties Matthews coefficient Solvent content 3.09 60.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.645 α = 90 b = 126.645 β = 90 c = 124.25 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000030 SLS X06SA
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 fixed target
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 44.82 99.9 0.998 10.2 13.2 30001
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.78 0.761
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.65 44.82 28464 1480 99.93 0.22848 0.22642 0.2371 0.26864 0.2748 RANDOM 71.729
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.99 3.99 -7.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.075 r_dihedral_angle_2_deg 11.976 r_long_range_B_refined 8.617 r_long_range_B_other 8.617 r_dihedral_angle_1_deg 6.85 r_scangle_other 6.653 r_mcangle_it 5.641 r_mcangle_other 5.64 r_scbond_it 4.506 r_scbond_other 4.469
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.075 r_dihedral_angle_2_deg 11.976 r_long_range_B_refined 8.617 r_long_range_B_other 8.617 r_dihedral_angle_1_deg 6.85 r_scangle_other 6.653 r_mcangle_it 5.641 r_mcangle_other 5.64 r_scbond_it 4.506 r_scbond_other 4.469 r_mcbond_it 3.762 r_mcbond_other 3.759 r_angle_refined_deg 1.447 r_angle_other_deg 0.55 r_chiral_restr 0.082 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5343 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 167
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction MOLREP phasing