☰ Navigation Tabs
Crystal structure of the complex of human carbonic anhydrase I with 4-sulfamoylphenyl 3-(p-tolylthio)propanoate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JV0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 296 28-31% PEG4000, 0.2 M sodium acetate, 0.1 M Tris pH 9.0
Crystal Properties Matthews coefficient Solvent content 2.33 47.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.64 α = 90 b = 70.9 β = 90 c = 121.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.00 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 61.2 99.9 0.074 0.078 0.999 17.35 12.43 92188
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.47 1.51 99.9 1.27 1.325 0.826 2.27 12.29
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.47 61.2 92188 4708 99.891 0.163 0.1603 0.1813 0.2086 0.2322 26.347
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.616 6.008 -4.391
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.175 r_dihedral_angle_4_deg 19.446 r_rigid_bond_restr 12.796 r_dihedral_angle_3_deg 12.772 r_dihedral_angle_1_deg 7.476 r_scangle_it 5.671 r_scangle_other 5.67 r_lrange_it 5.566 r_lrange_other 5.566 r_scbond_it 5.117
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.175 r_dihedral_angle_4_deg 19.446 r_rigid_bond_restr 12.796 r_dihedral_angle_3_deg 12.772 r_dihedral_angle_1_deg 7.476 r_scangle_it 5.671 r_scangle_other 5.67 r_lrange_it 5.566 r_lrange_other 5.566 r_scbond_it 5.117 r_scbond_other 5.116 r_mcangle_it 3.903 r_mcangle_other 3.903 r_mcbond_it 3.582 r_mcbond_other 3.58 r_angle_refined_deg 1.775 r_angle_other_deg 1.5 r_symmetry_xyhbond_nbd_refined 0.219 r_nbd_other 0.214 r_symmetry_nbd_refined 0.212 r_nbd_refined 0.208 r_symmetry_nbd_other 0.192 r_xyhbond_nbd_refined 0.179 r_nbtor_refined 0.167 r_chiral_restr 0.093 r_metal_ion_refined 0.088 r_symmetry_nbtor_other 0.083 r_symmetry_xyhbond_nbd_other 0.08 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4042 Nucleic Acid Atoms Solvent Atoms 442 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing