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Yeast Fzf1 Zn-fingers 1-3 bound to YHB1 26 bp DNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5KEA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 100 0.2 M ammonium acetate, 0.1 M bis-Tris pH 5.5, and 25% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.1 46.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.905 α = 90 b = 66.265 β = 90 c = 174.05 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 PIXEL DECTRIS EIGER X 9M Vertical Focusing Mirror 2002-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.95373 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 36.37 100 0.131 0.143 0.054 0.997 9.6 6.6 15710 67.68
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3.14 100 0.932 1.01 0.386 0.909 2 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.95 36.37 1.34 15518 773 98.9 0.2198 0.2184 0.2171 0.2474 0.2483 88.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 27.4462 f_angle_d 0.8668 f_chiral_restr 0.0517 f_plane_restr 0.011 f_bond_d 0.0063
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1470 Nucleic Acid Atoms 2202 Solvent Atoms 15 Heterogen Atoms 6
Software Software Software Name Purpose PHENIX refinement DIALS data reduction Aimless data scaling PHASER phasing