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PARP4 BRCT domain F39A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9DEV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 27% PEG3350, 0.2M ammonium sulfate and 0.1M sodium acetate pH 4.6
Crystal Properties Matthews coefficient Solvent content 2.75 55.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.411 α = 90 b = 115.411 β = 90 c = 115.411 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-04-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08B1-1 1.2 CLSI 08B1-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 99.9 0.999 22.3 8.6 10148
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 100 0.607 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 19.52 9612 528 99.86 0.18342 0.18159 0.1892 0.21838 0.2201 RANDOM 36.576
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.166 r_long_range_B_refined 9.004 r_long_range_B_other 8.784 r_dihedral_angle_1_deg 5.883 r_dihedral_angle_2_deg 4.717 r_scangle_other 3.688 r_scbond_it 2.248 r_scbond_other 2.242 r_mcangle_it 2.109 r_mcangle_other 2.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.166 r_long_range_B_refined 9.004 r_long_range_B_other 8.784 r_dihedral_angle_1_deg 5.883 r_dihedral_angle_2_deg 4.717 r_scangle_other 3.688 r_scbond_it 2.248 r_scbond_other 2.242 r_mcangle_it 2.109 r_mcangle_other 2.108 r_mcbond_it 1.444 r_mcbond_other 1.413 r_angle_refined_deg 1.257 r_angle_other_deg 0.431 r_chiral_restr 0.064 r_gen_planes_refined 0.006 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 762 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHENIX phasing