☰ Navigation Tabs
Water and chloride as allosteric inhibitors in WNK kinase osmosensing
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8EDH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 289 8% Tacsimate, 10% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.95 58.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.17 α = 90 b = 113.596 β = 101.359 c = 67.524 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2024-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.9795 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 43.107 75 0.96 9.8 5.2 7872
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.36 55 0.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.301 43.107 7872 372 70.036 0.181 0.1771 0.2698 0.2511 87.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.357 0.722 -1.099 -2.358
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 22.35 r_dihedral_angle_3_deg 19.1 r_dihedral_angle_2_deg 14.002 r_scangle_it 13.914 r_dihedral_angle_6_deg 13.389 r_mcangle_it 11.751 r_scbond_it 8.549 r_mcbond_it 7.13 r_dihedral_angle_1_deg 6.441 r_angle_refined_deg 1.617
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 22.35 r_dihedral_angle_3_deg 19.1 r_dihedral_angle_2_deg 14.002 r_scangle_it 13.914 r_dihedral_angle_6_deg 13.389 r_mcangle_it 11.751 r_scbond_it 8.549 r_mcbond_it 7.13 r_dihedral_angle_1_deg 6.441 r_angle_refined_deg 1.617 r_nbtor_refined 0.317 r_nbd_refined 0.247 r_symmetry_nbd_refined 0.236 r_xyhbond_nbd_refined 0.16 r_symmetry_xyhbond_nbd_refined 0.132 r_chiral_restr 0.116 r_gen_planes_refined 0.006 r_bond_refined_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4263 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing