9D36 | pdb_00009d36

Structure of the C-terminal Domain of RAGE and Its Inhibitor

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D HNCA	40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R	90% H2O/10% D2O	60 mM	6.5	1 atm	298	Bruker AVANCE 600
2	3D 1H-15N NOESY	40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R	90% H2O/10% D2O	60 mM	6.5	1 atm	298	Bruker AVANCE 600
3	3D 1H-13C NOESY aliphatic	40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R	90% H2O/10% D2O	60 mM	6.5	1 atm	298	Bruker AVANCE 600
4	3D HNCACB	40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R	90% H2O/10% D2O	60 mM	6.5	1 atm	298	Bruker AVANCE 600
5	3D HN(CO)CA	40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R	90% H2O/10% D2O	60 mM	6.5	1 atm	298	Bruker AVANCE 600
6	3D 1H-15N TOCSY	40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R	90% H2O/10% D2O	60 mM	6.5	1 atm	298	Bruker AVANCE 600
8	3D 1H-13C NOESY aromatic	40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R	90% H2O/10% D2O	60 mM	6.5	1 atm	298	Bruker AVANCE 600
7	3D CBCA(CO)NH	40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R	90% H2O/10% D2O	60 mM	6.5	1 atm	298	Bruker AVANCE 600
10	3D HCCH-TOCSY	40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R	90% H2O/10% D2O	60 mM	6.5	1 atm	298	Bruker AVANCE 600
9	3D H(CCO)NH	40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R	90% H2O/10% D2O	60 mM	6.5	1 atm	298	Bruker AVANCE 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
simulated annealing		YASARA

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	10000
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CARA		Keller and Wuthrich
2	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
3	refinement	YASARA	20.12.24	Elmar Krieger, Kornel Ozvoldik, Dr. Henk-Jan Joosten, Gert Vriend
4	peak picking	XEASY		Bartels et al.