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Structure of the C-terminal Domain of RAGE and Its Inhibitor
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCA 40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R 90% H2O/10% D2O 60 mM 6.5 1 atm 298 Bruker AVANCE 600 2 3D 1H-15N NOESY 40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R 90% H2O/10% D2O 60 mM 6.5 1 atm 298 Bruker AVANCE 600 3 3D 1H-13C NOESY aliphatic 40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R 90% H2O/10% D2O 60 mM 6.5 1 atm 298 Bruker AVANCE 600 4 3D HNCACB 40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R 90% H2O/10% D2O 60 mM 6.5 1 atm 298 Bruker AVANCE 600 5 3D HN(CO)CA 40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R 90% H2O/10% D2O 60 mM 6.5 1 atm 298 Bruker AVANCE 600 6 3D 1H-15N TOCSY 40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R 90% H2O/10% D2O 60 mM 6.5 1 atm 298 Bruker AVANCE 600 8 3D 1H-13C NOESY aromatic 40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R 90% H2O/10% D2O 60 mM 6.5 1 atm 298 Bruker AVANCE 600 7 3D CBCA(CO)NH 40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R 90% H2O/10% D2O 60 mM 6.5 1 atm 298 Bruker AVANCE 600 10 3D HCCH-TOCSY 40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R 90% H2O/10% D2O 60 mM 6.5 1 atm 298 Bruker AVANCE 600 9 3D H(CCO)NH 40 uM [U-13C; U-15N] ctRAGE, 100 uM RAGE406R 90% H2O/10% D2O 60 mM 6.5 1 atm 298 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing YASARA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 10000 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CARA Keller and Wuthrich 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 refinement YASARA 20.12.24 Elmar Krieger, Kornel Ozvoldik, Dr. Henk-Jan Joosten, Gert Vriend 4 peak picking XEASY Bartels et al.