9CVD | pdb_00009cvd

SET Domain of Histone-Lysine N-Methyltransferase NSD2 in Complex with Selective Inhibitor

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N TROSY	200 uM [U-2H; U-13C; U-15N; CH3 ILV] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 950
2	3D HNCA	200 uM [U-2H; U-13C; U-15N; CH3 ILV] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 950
3	3D HNCO	200 uM [U-2H; U-13C; U-15N; CH3 ILV] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 950
4	3D HN(CA)CO	200 uM [U-2H; U-13C; U-15N; CH3 ILV] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 950
5	3D HN(CO)CA	200 uM [U-2H; U-13C; U-15N; CH3 ILV] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 950
6	3D HNCACB	200 uM [U-2H; U-13C; U-15N; CH3 ILV] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 950
14	3D HN(COCA)CB	200 uM [U-2H; U-13C; U-15N; CH3 ILV] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 950
7	3D 1H-13C NOESY filtered	200 uM [U-13C; U-15N] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 950
8	3D 1H-15N NOESY	200 uM [U-2H; U-13C; U-15N; CH3 ILV] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 950
9	3D HCCH-TOCSY	200 uM [U-13C; U-15N] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 800
10	3D HN(COCA)CB	200 uM [U-2H; U-13C; U-15N; CH3 ILV] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 950
11	3D 1H-13C NOESY	200 uM [U-13C; U-15N] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 800
12	3D 1H-15N NOESY	200 uM [U-13C; U-15N] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 800
13	3D 1H-13C NOESY aliphatic	200 uM [U-13C; U-15N] NSD2 SET domain, 50 mM TRIS, 150 mM sodium chloride, 1 mM TCEP, 1 mM 17596	95% H2O/5% D2O	150 mM	7.5	1 atm	303.15	Bruker AVANCE NEO 950

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE NEO	800
2	Bruker	AVANCE NEO	950

NMR Refinement
Method	Details	Software
simulated annealing	2.4	HADDOCK

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	500
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	Sparky		Goddard
2	structure calculation	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
3	refinement	HADDOCK		Bonvin
4	peak picking	Sparky		Goddard