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Importin alpha isoform 2 with synthetic zero net-charge nuclear localization signal
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WV6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.6 296 0.7 M NaCit, 0.1 M HEPES pH 6.6, 60% glycerol, 10 mM DTT
Crystal Properties Matthews coefficient Solvent content 3.05 59.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.431 α = 90 b = 89.818 β = 90 c = 99.66 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2023-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9537 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 50 100 0.08 0.088 0.034 0.997 6.4 6.4 30438
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.34 2.38 100 0.541 0.588 0.227 0.862 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.34 49.88 28920 1464 99.83 0.15952 0.15725 0.1659 0.20496 0.2051 RANDOM 44.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -1.2 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.543 r_long_range_B_other 11.257 r_long_range_B_refined 11.246 r_dihedral_angle_2_deg 9.531 r_scangle_other 8.883 r_mcangle_other 5.98 r_mcangle_it 5.976 r_scbond_it 5.883 r_scbond_other 5.881 r_dihedral_angle_1_deg 4.648
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.543 r_long_range_B_other 11.257 r_long_range_B_refined 11.246 r_dihedral_angle_2_deg 9.531 r_scangle_other 8.883 r_mcangle_other 5.98 r_mcangle_it 5.976 r_scbond_it 5.883 r_scbond_other 5.881 r_dihedral_angle_1_deg 4.648 r_mcbond_it 4.209 r_mcbond_other 4.193 r_angle_refined_deg 1.367 r_angle_other_deg 0.478 r_chiral_restr 0.071 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3356 Nucleic Acid Atoms Solvent Atoms 260 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling HKL-2000 data reduction PHASER phasing