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Interaction of chlorido(8-aminoquinoline)(pentamethylcyclopentadiene)rhodium(III) with HEWL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NHI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 294 Hen egg white lysozyme (100mg/mL), 0.8 M sodium chloride, and 0.1 M sodium acetate pH 4.7. Rh(III)(pentamethylcyclopentadiene)(8-aminoquinoline)chlorido (0.98 mg, 1 mg/mL) soak occurred in 0.8 M sodium nitrate and 0.1 M sodium acetate pH 4.7
Crystal Properties Matthews coefficient Solvent content 2.07 40.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.007 α = 90 b = 79.007 β = 90 c = 37.952 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2020-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 39.535 100 0.138 0.14 0.019 0.999 18.1 52.8 33868
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.27 0.905 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.25 39.535 33808 1693 99.965 0.162 0.1602 0.1823 0.188 0.2076 16.868
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.912 0.912 -1.825
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.843 r_dihedral_angle_6_deg 15.105 r_dihedral_angle_3_deg 13.36 r_lrange_it 11.428 r_lrange_other 11.257 r_scangle_it 7.273 r_scangle_other 7.269 r_dihedral_angle_1_deg 6.504 r_mcangle_other 6.239 r_mcangle_it 6.232
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.843 r_dihedral_angle_6_deg 15.105 r_dihedral_angle_3_deg 13.36 r_lrange_it 11.428 r_lrange_other 11.257 r_scangle_it 7.273 r_scangle_other 7.269 r_dihedral_angle_1_deg 6.504 r_mcangle_other 6.239 r_mcangle_it 6.232 r_scbond_it 4.888 r_scbond_other 4.884 r_mcbond_it 4.253 r_mcbond_other 4.203 r_rigid_bond_restr 2.892 r_angle_refined_deg 2.439 r_angle_other_deg 0.724 r_symmetry_nbd_refined 0.355 r_nbd_other 0.291 r_nbd_refined 0.238 r_symmetry_nbd_other 0.2 r_symmetry_xyhbond_nbd_refined 0.184 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.138 r_symmetry_nbtor_other 0.11 r_chiral_restr 0.1 r_metal_ion_refined 0.044 r_gen_planes_refined 0.01 r_bond_refined_d 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PHASER phasing Coot model building