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Mink RyR3 in open conformation bound to Ca2+/ATP/caffeine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9C1E
Sample mink RyR3 + FKBP12.6
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details blotted for 3 s (blot force of 7 to 10) using ashless blotting paper (Whatman)
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 84690 Reported Resolution (Å) 3.22 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C4
Map-Model Fitting and Refinement Id 1 (9C1E) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target cross-correlation coefficient Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.3.0 PARTICLE SELECTION crYOLO 1.9.7 IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC 4.3.0 MODEL FITTING UCSF ChimeraX 1.7 MODEL FITTING Coot 0.9.8.92 INITIAL EULER ASSIGNMENT cryoSPARC 4.3.0 FINAL EULER ASSIGNMENT cryoSPARC 4.3.0 RECONSTRUCTION cryoSPARC 4.4.1 MODEL REFINEMENT PHENIX 1.20.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 162679