9BFO | pdb_00009bfo

BCAT mutant 36E

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2COJ

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	EVAPORATION		298	18% PEG 3350, 200 mM MgCl2

Crystal Properties
Matthews coefficient	Solvent content
2.45	49.82

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 66.962	α = 90
b = 106.896	β = 90
c = 110.477	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X 16M		2024-04-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL12-2	0.9795	SSRL	BL12-2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.663	76.822	92.8	0.148	0.045	0.986	9.5	11.4		992392

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.663	1.692			0.294	0.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.663	76.822	85007	4161	90.687	0.207	0.2046	0.2151	0.2469	0.2575	33.482

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.44			2.438		0.001

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.133
r_dihedral_angle_3_deg	14.739
r_dihedral_angle_2_deg	9.483
r_lrange_it	7.841
r_lrange_other	7.838
r_dihedral_angle_1_deg	6.829
r_scangle_it	6.736
r_scangle_other	6.735
r_scbond_other	4.573
r_scbond_it	4.571
r_mcangle_other	4.43
r_mcangle_it	4.423
r_mcbond_it	3.363
r_mcbond_other	3.361
r_angle_refined_deg	1.873
r_angle_other_deg	0.656
r_nbd_refined	0.211
r_symmetry_nbd_other	0.198
r_nbtor_refined	0.178
r_nbd_other	0.169
r_xyhbond_nbd_refined	0.151
r_symmetry_nbd_refined	0.138
r_chiral_restr	0.109
r_symmetry_nbtor_other	0.085
r_symmetry_xyhbond_nbd_refined	0.084
r_bond_refined_d	0.009
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5634
Nucleic Acid Atoms
Solvent Atoms	286
Heterogen Atoms	30

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
autoPROC	data scaling
MOLREP	phasing