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Envelope protein ASU of YFV-ES504 with YFV-17D DIII in complex with 2C9 Fab
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.058 f_angle_d 1.008 f_chiral_restr 0.054 f_plane_restr 0.009 f_bond_d 0.006
Sample YFV envelope protein expressed in the backbone of Binjari virus in complex with 2C9 Fab Sample Components YFV envelope protein expressed in the genomic backbone of BinJV 2C9 Fab HC 2C9 Fab LC
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 314100 Reported Resolution (Å) 3.6 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model JEOL CRYO ARM 300 Minimum Defocus (nm) 5000 Maximum Defocus (nm) 25000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version CTF CORRECTION CTFFIND 4 MODEL FITTING Coot 0.8.9.2 MODEL FITTING ISOLDE 1.2.1 RECONSTRUCTION cisTEM 2.0.0 MODEL REFINEMENT PHENIX 1.19.2
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION