☰ Navigation Tabs
NorA in inward-occluded conformation (NorA-BRIL fusion)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Other
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 3.844 f_angle_d 0.587 f_chiral_restr 0.038 f_plane_restr 0.004 f_bond_d 0.003
Sample NorA-BRIL(3A)-FabBRIL
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 117232 Reported Resolution (Å) 3.18 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 55.54
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC v3.3.1 CTF CORRECTION cryoSPARC v3.3.1 MODEL FITTING PHENIX 1.20.1 INITIAL EULER ASSIGNMENT cryoSPARC v3.3.1 FINAL EULER ASSIGNMENT cryoSPARC v3.3.1 CLASSIFICATION cryoSPARC v3.3.1 RECONSTRUCTION cryoSPARC v3.3.1 MODEL REFINEMENT PHENIX 1.20.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION Patch CTF estimation (multi) was used for CTF correction 1812072 Topaz training