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NMR solution structure of cell-permeant miniature protein ZF5.3
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-13C NOESY 800 uM [U-13C; U-15N] ZF5.3, 20 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 1.6 mM ZnCl2 90% H2O/10% D2O 150 mM 5.5 1 atm 298 Bruker AVANCE NEO 800 6 3D 1H-15N NOESY 800 uM [U-13C; U-15N] ZF5.3, 20 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 1.6 mM ZnCl2 90% H2O/10% D2O 150 mM 5.5 1 atm 298 Bruker AVANCE NEO 800 2 2D 1H-13C HSQC 800 uM [U-13C; U-15N] ZF5.3, 20 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 1.6 mM ZnCl2 90% H2O/10% D2O 150 mM 5.5 1 atm 298 Bruker AVANCE NEO 800 3 2D 1H-13C HSQC aromatic 800 uM [U-13C; U-15N] ZF5.3, 20 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 1.6 mM ZnCl2 90% H2O/10% D2O 150 mM 5.5 1 atm 298 Bruker AVANCE NEO 800 4 2D 1H-15N HSQC 800 uM [U-13C; U-15N] ZF5.3, 20 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 1.6 mM ZnCl2 90% H2O/10% D2O 150 mM 5.5 1 atm 298 Bruker AVANCE NEO 800 5 3D HCCH-TOCSY 800 uM [U-13C; U-15N] ZF5.3, 20 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 1.6 mM ZnCl2 90% H2O/10% D2O 150 mM 5.5 1 atm 298 Bruker AVANCE NEO 800 7 1D 1H 800 uM [U-13C; U-15N] ZF5.3, 20 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 1.6 mM ZnCl2 90% H2O/10% D2O 150 mM 5.5 1 atm 298 Bruker AVANCE NEO 800 8 1D 1H 800 uM [U-13C; U-15N] ZF5.3, 20 mM TRIS, 100 mM sodium chloride, 2 mM TCEP, 1.6 mM ZnCl2 90% H2O/10% D2O 150 mM 5.5 1 atm 298 Bruker AVANCE NEO 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE NEO 600 2 Bruker AVANCE NEO 800
NMR Refinement Method Details Software molecular dynamics X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CcpNmr Analysis Assign 3.2.0 Laue E.D. 5 processing TopSpin 4.3.0 Bruker Biospin 2 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 refinement X-PLOR NIH 3.5 Schwieters, Kuszewski, Tjandra and Clore 4 peak picking ARTINA Klukowski, P., Riek, R. and Guntert, P.