☰ Navigation Tabs
Crystal structure of trypsin at 100 Kelvin with benzamidine (Duplicate)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1S0R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.4 298 0.2 M Potassium phosphate dibasic, 20% w/v Polyethylene glycol 3,350.
Crystal Properties Matthews coefficient Solvent content 2.25 45.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.317 α = 90 b = 58.131 β = 90 c = 66.603 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CMOS BRUKER PHOTON 100 2023-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER TURBO X-RAY SOURCE 1.54184
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.497 24.618 96.23 0.818 22.61 10 33365
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 24.6 0.8184
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.497 24.618 33365 1664 96.211 0.16 0.1582 0.1582 0.1885 0.1887 8.436
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.001 -0.256 0.257
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.457 r_dihedral_angle_2_deg 11.756 r_dihedral_angle_3_deg 11.272 r_dihedral_angle_1_deg 7.24 r_lrange_it 5.512 r_lrange_other 4.637 r_scangle_it 2.846 r_scangle_other 2.846 r_scbond_it 1.908 r_scbond_other 1.906
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.457 r_dihedral_angle_2_deg 11.756 r_dihedral_angle_3_deg 11.272 r_dihedral_angle_1_deg 7.24 r_lrange_it 5.512 r_lrange_other 4.637 r_scangle_it 2.846 r_scangle_other 2.846 r_scbond_it 1.908 r_scbond_other 1.906 r_angle_refined_deg 1.864 r_dihedral_angle_other_2_deg 1.755 r_mcangle_other 1.707 r_mcangle_it 1.706 r_mcbond_it 1.115 r_mcbond_other 1.108 r_angle_other_deg 0.661 r_xyhbond_nbd_refined 0.271 r_nbd_refined 0.215 r_symmetry_xyhbond_nbd_refined 0.204 r_symmetry_nbd_other 0.193 r_nbtor_refined 0.177 r_nbd_other 0.175 r_symmetry_nbd_refined 0.126 r_metal_ion_refined 0.099 r_chiral_restr 0.098 r_symmetry_nbtor_other 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1629 Nucleic Acid Atoms Solvent Atoms 349 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement SAINT data reduction SCALA data scaling MOLREP phasing