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Crystal structure of PfHO from Plasmodium falciparum at 2.78 A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 0.4M (NH4)2SO4, 0.65M Li2SO4, 0.1M sodium citrate tribasic dihydrate, pH 5.6
Crystal Properties Matthews coefficient Solvent content 2.2 44.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.91 α = 90 b = 55.37 β = 90 c = 162.4 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2012-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.78 55.4 99.8 0.107 0.045 0.998 11.2 6.6 13064
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.78 2.93 99.5 0.715 0.779 2.3 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.78 45.79 12443 573 99.64 0.20539 0.2027 0.2076 0.26366 0.2649 RANDOM 64.301
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 -4.12 4.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.361 r_dihedral_angle_4_deg 23.484 r_dihedral_angle_3_deg 19.795 r_long_range_B_refined 7.569 r_long_range_B_other 7.567 r_dihedral_angle_1_deg 6.165 r_scangle_other 3.982 r_mcangle_it 3.557 r_mcangle_other 3.557 r_scbond_it 2.394
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.361 r_dihedral_angle_4_deg 23.484 r_dihedral_angle_3_deg 19.795 r_long_range_B_refined 7.569 r_long_range_B_other 7.567 r_dihedral_angle_1_deg 6.165 r_scangle_other 3.982 r_mcangle_it 3.557 r_mcangle_other 3.557 r_scbond_it 2.394 r_scbond_other 2.367 r_mcbond_it 2.216 r_mcbond_other 2.215 r_angle_refined_deg 1.559 r_angle_other_deg 1.326 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3076 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing