8ZD8 | pdb_00008zd8

NMR structure of the (CGG-dsDNA:ND=) 1:1 complex

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	2.7 mM None DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*G)-3'), 2.7 mM None DNA (5'-D(*CP*AP*TP*TP*CP*GP*GP*TP*TP*AP*G)-3'), 2.7 mM None ND, 20 mM None sodium phosphate (pH 6.8), 100 mM None NaCl	95% H2O/5% D2O	120 mM	6.8	1 atm	293	Bruker AVANCE III 950
2	2D 1H-1H TOCSY	2.7 mM None DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*G)-3'), 2.7 mM None DNA (5'-D(*CP*AP*TP*TP*CP*GP*GP*TP*TP*AP*G)-3'), 2.7 mM None ND, 20 mM None sodium phosphate (pH 6.8), 100 mM None NaCl	95% H2O/5% D2O	120 mM	6.8	1 atm	293	Bruker AVANCE III HD 800
3	2D 1H-31P HSQC	2.7 mM None DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*G)-3'), 2.7 mM None DNA (5'-D(*CP*AP*TP*TP*CP*GP*GP*TP*TP*AP*G)-3'), 2.7 mM None ND, 20 mM None sodium phosphate (pH 6.8), 100 mM None NaCl	95% H2O/5% D2O	120 mM	6.8	1 atm	293	Bruker AVANCE III HD 600
4	2D 1H-15N HSQC	0.1 mM 10% 13C/15N G6 or G7 DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*G)-3'), 0.1 mM 10% 13C/15N G17 or G18 DNA (5'-D(*CP*AP*TP*TP*CP*GP*GP*TP*TP*AP*G)-3'), 0.1 mM None ND, 20 mM None sodium phosphate (pH 6.8), 100 mM None NaCl	95% H2O/5% D2O	120 mM	6.8	1 atm	293	Bruker AVANCE III HD 600
5	1D 15N	2.0 mM None DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*G)-3'), 2.0 mM None DNA (5'-D(*CP*AP*TP*TP*CP*GP*GP*TP*TP*AP*G)-3'), 2.0 mM None 15N4-ND, 20 mM None sodium phosphate (pH 6.8), 100 mM None NaCl	95% H2O/5% D2O	120 mM	6.8	1 atm	293	Bruker AVANCE III HD 500
6	2D 1H-15N HSQC	2.0 mM None DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*G)-3'), 2.0 mM None DNA (5'-D(*CP*AP*TP*TP*CP*GP*GP*TP*TP*AP*G)-3'), 2.0 mM None 15N4-ND, 20 mM None sodium phosphate (pH 6.8), 100 mM None NaCl	95% H2O/5% D2O	120 mM	6.8	1 atm	293	Bruker AVANCE III HD 500

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	950
2	Bruker	AVANCE III HD	800
3	Bruker	AVANCE III HD	600
4	Bruker	AVANCE III HD	500

NMR Refinement
Method	Details	Software
simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	50
Conformers Submitted Total Number	10
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	NMRFAM-SPARKY		Lee W, Tonelli M, Markley JL
2	structure calculation	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
3	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
4	peak picking	NMRFAM-SPARKY		Lee W, Tonelli M, Markley JL