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An acyltransferase with selective perhydrolytic activity
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5HOE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 60% v/v Tacsimate, 5mM Ethyl acetate, 5mM Hydrogen peroxide
Crystal Properties Matthews coefficient Solvent content 2.73 54.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.75 α = 90 b = 165.35 β = 90 c = 150.46 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON II 2023-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE BRUKER D8 QUEST 1.45
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.97 48.17 96 0.159 6 3 32663
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.97 3.13 0.418
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.97 48.17 31033 1626 95.37 0.21033 0.20883 0.2142 0.2391 0.2428 RANDOM 23.992
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1 0.95 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.723 r_dihedral_angle_4_deg 19.607 r_dihedral_angle_3_deg 16.33 r_dihedral_angle_1_deg 7.191 r_long_range_B_refined 3.534 r_long_range_B_other 3.534 r_mcangle_it 2.181 r_mcangle_other 2.181 r_scangle_other 2.089 r_angle_refined_deg 1.513
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.723 r_dihedral_angle_4_deg 19.607 r_dihedral_angle_3_deg 16.33 r_dihedral_angle_1_deg 7.191 r_long_range_B_refined 3.534 r_long_range_B_other 3.534 r_mcangle_it 2.181 r_mcangle_other 2.181 r_scangle_other 2.089 r_angle_refined_deg 1.513 r_mcbond_it 1.282 r_mcbond_other 1.279 r_scbond_it 1.217 r_scbond_other 1.217 r_angle_other_deg 0.806 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10071 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction xia2 data scaling PHENIX phasing