Experiment: 8YSY

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-15N] Ubiquitin from Rice (Oryza sativa)	90% H2O/10% D2O	25 mM	6.8	1 bar	298	Bruker AVANCE 700
2	3D CBCA(CO)NH	1 mM [U-13C; U-15N] Ubiquitin from Rice (Oryza sativa)	90% H2O/10% D2O	25 mM	6.8	1 bar	298	Bruker AVANCE 700
3	3D HNCACB	1 mM [U-13C; U-15N] Ubiquitin from Rice (Oryza sativa)	90% H2O/10% D2O	25 mM	6.8	1 bar	298	Bruker AVANCE 700
4	3D C(CO)NH	1 mM [U-13C; U-15N] Ubiquitin from Rice (Oryza sativa)	90% H2O/10% D2O	25 mM	6.8	1 bar	298	Bruker AVANCE 700
5	3D 1H-15N TOCSY	1 mM [U-13C; U-15N] Ubiquitin from Rice (Oryza sativa)	90% H2O/10% D2O	25 mM	6.8	1 bar	298	Bruker AVANCE 700
6	3D 1H-13C NOESY	1 mM [U-13C; U-15N] Ubiquitin from Rice (Oryza sativa)	90% H2O/10% D2O	25 mM	6.8	1 bar	298	Agilent Direct Drive 600
7	3D 1H-15N NOESY	1 mM [U-13C; U-15N] Ubiquitin from Rice (Oryza sativa)	90% H2O/10% D2O	25 mM	6.8	1 bar	298	Agilent Direct Drive 600
8	3D H(CCO)NH	1 mM [U-13C; U-15N] Ubiquitin from Rice (Oryza sativa)	90% H2O/10% D2O	25 mM	6.8	1 bar	298	Agilent Direct Drive 600
9	1D DOSY	1 mM [U-13C; U-15N] Ubiquitin from Rice (Oryza sativa)	90% H2O/10% D2O	25 mM	6.8	1 bar	298	Agilent Direct Drive 600
10	3D HNCO	1 mM [U-13C; U-15N] Ubiquitin from Rice (Oryza sativa)	90% H2O/10% D2O	25 mM	6.8	1 bar	298	Agilent Direct Drive 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Agilent	Direct Drive	600
2	Bruker	AVANCE	700

NMR Refinement
Method	Details	Software
simulated annealing	structures were calculated using automated NOE assignment protocol with 15N NOEs assigned and 13C NOEs unassigned	CYANA
water refinement		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	40
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CcpNmr Analysis	2.5.2	CCPN
2	structure calculation	CYANA	3.98.15	Guntert, Mumenthaler and Wuthrich
3	refinement	X-PLOR NIH	3.4	Schwieters, Kuszewski, Tjandra and Clore
4	collection	VnmrJ	4.2	Varian
5	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8YSY | pdb_00008ysy