☰ Navigation Tabs
Crystal Structure of Lymnaea stagnalis Acetylcholine-Binding Protein Complexed with Dinotefuran
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZJU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.7 293 0.2 M Na citrate, pH 5.7, 15-22% PEG3350, 1.0 mM dinotefuran,
Crystal Properties Matthews coefficient Solvent content 2.36 47.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.728 α = 90 b = 74.728 β = 90 c = 351.295 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44B2 0.919 SPring-8 BL44B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 47.6 99.8 0.079 31.2 11.5 34047
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 99.9 0.368 7.2 11.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.6 47.6 33973 1723 99.921 0.17 0.1662 0.1712 0.2327 0.2265 50.596
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.135 0.568 1.135 -3.682
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.484 r_dihedral_angle_6_deg 13.089 r_dihedral_angle_2_deg 7.272 r_dihedral_angle_1_deg 7.17 r_lrange_it 5.926 r_lrange_other 5.891 r_mcangle_it 2.738 r_mcangle_other 2.738 r_scangle_it 2.476 r_scangle_other 2.476
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.484 r_dihedral_angle_6_deg 13.089 r_dihedral_angle_2_deg 7.272 r_dihedral_angle_1_deg 7.17 r_lrange_it 5.926 r_lrange_other 5.891 r_mcangle_it 2.738 r_mcangle_other 2.738 r_scangle_it 2.476 r_scangle_other 2.476 r_mcbond_it 1.53 r_mcbond_other 1.53 r_scbond_it 1.406 r_scbond_other 1.405 r_angle_refined_deg 1.082 r_angle_other_deg 0.386 r_symmetry_nbd_other 0.185 r_nbd_refined 0.181 r_nbtor_refined 0.171 r_symmetry_nbd_refined 0.165 r_xyhbond_nbd_refined 0.157 r_symmetry_xyhbond_nbd_refined 0.152 r_nbd_other 0.14 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.049 r_symmetry_xyhbond_nbd_other 0.041 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8278 Nucleic Acid Atoms Solvent Atoms 407 Heterogen Atoms 70
Software Software Software Name Purpose HKL-2000 data reduction Aimless data scaling PHASER phasing REFMAC refinement