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The Crystal Structure of GSK3b from Biortus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ACC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% PEG 3350, 5% Glycerol, 20mM MgCl2, 100mM Hepes pH 7.2
Crystal Properties Matthews coefficient Solvent content 3.36 63.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.694 α = 90 b = 85.429 β = 90 c = 178.091 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.953725 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 48.75 99.8 0.086 15.8 7.9 50034
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.48 1.039
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.4 42.751 50034 2516 99.763 0.194 0.1917 0.1959 0.2424 0.2427 59.962
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.789 3.097 -4.885
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.186 r_dihedral_angle_4_deg 14.453 r_dihedral_angle_3_deg 13.101 r_lrange_other 10.124 r_lrange_it 10.123 r_dihedral_angle_1_deg 6.158 r_scangle_it 4.945 r_scangle_other 4.944 r_mcangle_it 4.922 r_mcangle_other 4.922
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.186 r_dihedral_angle_4_deg 14.453 r_dihedral_angle_3_deg 13.101 r_lrange_other 10.124 r_lrange_it 10.123 r_dihedral_angle_1_deg 6.158 r_scangle_it 4.945 r_scangle_other 4.944 r_mcangle_it 4.922 r_mcangle_other 4.922 r_scbond_it 3.003 r_scbond_other 3.002 r_mcbond_it 2.931 r_mcbond_other 2.93 r_angle_refined_deg 1.209 r_angle_other_deg 1.087 r_nbd_refined 0.189 r_symmetry_xyhbond_nbd_refined 0.171 r_symmetry_nbd_other 0.164 r_nbtor_refined 0.158 r_xyhbond_nbd_refined 0.134 r_nbd_other 0.129 r_symmetry_nbtor_other 0.071 r_symmetry_nbd_refined 0.066 r_chiral_restr 0.051 r_chiral_restr_other 0.033 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5676 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms 157
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing