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The Crystal Structure of IFI16 from Biortus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OQ0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.15M K bromide, 30% w/v PEG 2000 MME
Crystal Properties Matthews coefficient Solvent content 2.17 43.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.4 α = 90 b = 87.418 β = 99.274 c = 111.214 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2021-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 1.18075 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 46.523 99.8 0.072 14.8 6.6 83684
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 0.798
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.7 46.523 83653 4254 99.798 0.203 0.2007 0.207 0.2472 0.2534 27.626
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.443 -1.388 -0.783 0.754
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.918 r_dihedral_angle_4_deg 18.365 r_dihedral_angle_3_deg 14.212 r_dihedral_angle_1_deg 7.406 r_lrange_it 5.265 r_lrange_other 5.101 r_scangle_it 3.287 r_scangle_other 3.287 r_mcangle_it 2.563 r_mcangle_other 2.563
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.918 r_dihedral_angle_4_deg 18.365 r_dihedral_angle_3_deg 14.212 r_dihedral_angle_1_deg 7.406 r_lrange_it 5.265 r_lrange_other 5.101 r_scangle_it 3.287 r_scangle_other 3.287 r_mcangle_it 2.563 r_mcangle_other 2.563 r_scbond_it 2.063 r_scbond_other 2.063 r_mcbond_it 1.632 r_mcbond_other 1.63 r_angle_refined_deg 1.33 r_angle_other_deg 1.228 r_symmetry_nbd_refined 0.349 r_nbd_other 0.283 r_metal_ion_refined 0.239 r_nbd_refined 0.231 r_symmetry_nbd_other 0.186 r_xyhbond_nbd_refined 0.156 r_nbtor_refined 0.155 r_symmetry_xyhbond_nbd_refined 0.141 r_symmetry_nbtor_other 0.071 r_chiral_restr 0.056 r_symmetry_xyhbond_nbd_other 0.02 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6196 Nucleic Acid Atoms Solvent Atoms 792 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing