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BlCas9-sgRNA-target DNA complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5X2D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 200 mM sodium-acetate pH 4.5, 15%-20% PEG 500 MME, 200 mM ammonium sulfate, 10 mM strontium chloride
Crystal Properties Matthews coefficient Solvent content 2.78 55.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.75 α = 90 b = 99.21 β = 97.087 c = 119.3 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-09-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 118.389 99.9 0.25 19.01 28 112881
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.12 4.111 4.186 0.649
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2 118.389 112876 5611 99.927 0.2 0.198 0.2037 0.2311 0.235 59.081
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.83 5.267 -2.876 -0.256
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.061 r_dihedral_angle_3_deg 14.901 r_lrange_it 9.625 r_lrange_other 9.456 r_scangle_it 7.688 r_scangle_other 7.636 r_dihedral_angle_2_deg 7.091 r_dihedral_angle_1_deg 6.809 r_mcangle_other 6.159 r_mcangle_it 6.158
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.061 r_dihedral_angle_3_deg 14.901 r_lrange_it 9.625 r_lrange_other 9.456 r_scangle_it 7.688 r_scangle_other 7.636 r_dihedral_angle_2_deg 7.091 r_dihedral_angle_1_deg 6.809 r_mcangle_other 6.159 r_mcangle_it 6.158 r_scbond_it 5.319 r_scbond_other 5.267 r_mcbond_it 4.487 r_mcbond_other 4.487 r_angle_refined_deg 1.615 r_dihedral_angle_other_2_deg 1.445 r_angle_other_deg 0.577 r_nbtor_refined 0.187 r_nbd_refined 0.175 r_symmetry_nbd_other 0.154 r_symmetry_nbd_refined 0.143 r_xyhbond_nbd_refined 0.142 r_symmetry_xyhbond_nbd_refined 0.131 r_nbd_other 0.116 r_symmetry_nbtor_other 0.071 r_chiral_restr 0.069 r_symmetry_xyhbond_nbd_other 0.04 r_gen_planes_refined 0.009 r_bond_refined_d 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7146 Nucleic Acid Atoms 2983 Solvent Atoms 325 Heterogen Atoms 130
Software Software Software Name Purpose REFMAC refinement DIALS data reduction XSCALE data scaling MOLREP phasing