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Crystal structure of r(G4C2)2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7ECH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 40 mM Sodium Cacodylate trihydrate (pH 7.0), 10% MPD, 12 mM spermine tetrahydrochloride and 80mM KCl
Crystal Properties Matthews coefficient Solvent content 4.7 73.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.971 α = 90 b = 62.971 β = 90 c = 129.227 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97891 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 50 99.9 0.15 0.154 0.033 0.976 2.9 22.5 3568
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3 100 1.768 1.806 0.362 0.73 24.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.956 41.71 3381 155 99.86 0.26293 0.26108 0.2636 0.29995 0.2979 RANDOM 62.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.07 -0.14 0.44
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 9.131 r_long_range_B_other 9.129 r_scangle_other 7.274 r_scbond_it 4.969 r_scbond_other 4.964 r_angle_refined_deg 2.003 r_angle_other_deg 0.757 r_chiral_restr 0.159 r_gen_planes_refined 0.014 r_bond_refined_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 9.131 r_long_range_B_other 9.129 r_scangle_other 7.274 r_scbond_it 4.969 r_scbond_other 4.964 r_angle_refined_deg 2.003 r_angle_other_deg 0.757 r_chiral_restr 0.159 r_gen_planes_refined 0.014 r_bond_refined_d 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 480 Solvent Atoms 1 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling HKL-2000 data reduction PHASER phasing