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Solution structure of the TAD domain (450-504) of human transcriptional coactivator YAP1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O 95% H2O/5% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE III 600 2 3D CBCA(CO)NH 0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O 95% H2O/5% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE III 600 3 3D CBCANH 0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O 95% H2O/5% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE III 600 4 3D HNCO 0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O 95% H2O/5% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE III 600 5 3D H(CCO)NH 0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O 95% H2O/5% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE III 600 6 3D C(CO)NH 0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O 95% H2O/5% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE III 600 7 3D HBHA(CO)NH 0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O 95% H2O/5% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE III 600 8 3D 1H-15N NOESY 0.95 mM [U-99% 13C; U-99% 15N] YAP-TAD, 20 mM HEPES, 100 mM sodium chloride, 5 % v/v [U-99% 2H] D2O 95% H2O/5% D2O 120 mM 7.0 1 atm 298 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 4 peak picking NMRFAM-SPARKY POKY build 20230213 Woonghee Lee, Mehdi Rahimi, Yeongjoon Lee and Abigail Chiu 1 chemical shift assignment NMRFAM-SPARKY POKY build 20230213 Woonghee Lee, Mehdi Rahimi, Yeongjoon Lee and Abigail Chiu 2 structure calculation CNS ARIA2.3 Wolfgang Rieping, Michael Habeck, Benjamin Bardiaux, Aymeric Bernard, Therese E. Malliavin and Michael Nilges