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Horse heart myoglobin reconstituted with an iron complex of porphyrin bearing two CF3 groups (rMb(FePor(CF3)2))
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DWR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 2.8 M ammonium sulfate, 100 mM Tis-HCl buffer (pH 7.0)
Crystal Properties Matthews coefficient Solvent content 1.83 32.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.26 α = 90 b = 28.74 β = 105.472 c = 63.65 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 1.00 SPring-8 BL45XU
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 fixed target
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.72 33.792 96.4 0.155 0.991 10.4 6.5 12813
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.72 1.75 0.738 0.681 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.72 33.792 12804 639 95.724 0.16 0.1572 0.1677 0.2155 0.2251 19.474
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.008 0.006 -0.005 -0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.876 r_dihedral_angle_3_deg 13.74 r_lrange_it 6.638 r_lrange_other 6.535 r_dihedral_angle_2_deg 5.934 r_dihedral_angle_1_deg 5.238 r_scangle_it 4.386 r_scangle_other 4.384 r_scbond_it 2.839 r_scbond_other 2.838
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.876 r_dihedral_angle_3_deg 13.74 r_lrange_it 6.638 r_lrange_other 6.535 r_dihedral_angle_2_deg 5.934 r_dihedral_angle_1_deg 5.238 r_scangle_it 4.386 r_scangle_other 4.384 r_scbond_it 2.839 r_scbond_other 2.838 r_mcangle_other 2.799 r_mcangle_it 2.786 r_angle_refined_deg 1.973 r_mcbond_it 1.752 r_mcbond_other 1.739 r_angle_other_deg 0.525 r_xyhbond_nbd_refined 0.224 r_nbd_refined 0.218 r_nbd_other 0.209 r_symmetry_nbd_refined 0.199 r_symmetry_nbd_other 0.178 r_nbtor_refined 0.177 r_symmetry_xyhbond_nbd_refined 0.15 r_chiral_restr 0.071 r_symmetry_nbtor_other 0.069 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.008 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1194 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing