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Carbonic Anhydrase II T200V variant 0 atm CO2 pressure (pH 7.8)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LUW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 1.3M sodium citrate, 50mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.08 40.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.107 α = 90 b = 41.292 β = 104.24 c = 72.312 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225-HS 2023-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6D 0.97934 PAL/PLS 6D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 50 96.3 0.064 0.069 0.025 0.997 30.9 7.5 44044
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.44 92.2 0.597 0.657 0.268 0.79 2.3 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.42 30 41828 2170 96.24 0.11761 0.11555 0.1156 0.15539 0.156 RANDOM 18.125
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.03 -0.36 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.953 r_sphericity_free 34.347 r_dihedral_angle_4_deg 27.045 r_sphericity_bonded 15.841 r_dihedral_angle_3_deg 13.296 r_long_range_B_refined 8.655 r_dihedral_angle_1_deg 6.868 r_scangle_other 5.645 r_long_range_B_other 5.612 r_scbond_other 5.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.953 r_sphericity_free 34.347 r_dihedral_angle_4_deg 27.045 r_sphericity_bonded 15.841 r_dihedral_angle_3_deg 13.296 r_long_range_B_refined 8.655 r_dihedral_angle_1_deg 6.868 r_scangle_other 5.645 r_long_range_B_other 5.612 r_scbond_other 5.075 r_scbond_it 5.046 r_rigid_bond_restr 4.867 r_mcangle_other 3.214 r_mcangle_it 3.213 r_mcbond_it 2.551 r_mcbond_other 2.55 r_angle_refined_deg 2.442 r_angle_other_deg 1.239 r_chiral_restr 0.18 r_bond_refined_d 0.029 r_gen_planes_refined 0.014 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 292 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing