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Carbonic anhydrase II mutant with DRD function
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3DC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 1.45M sodium citrate, 0.1M Tris-HCl pH 8.0, 4% v/v Polypropylene glycol P 400
Crystal Properties Matthews coefficient Solvent content 2.01 38.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.534 α = 90 b = 69.042 β = 90 c = 80.075 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 16M 2021-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97626 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 29.15 99.1 0.095 0.099 0.029 0.999 18.3 11.7 22756
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.83 88.4 0.729 0.786 0.283 0.796 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.79 29.15 22706 1126 99.118 0.152 0.1501 0.1624 0.1808 0.1913 RANDOM 22.557
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.041 -0.013 -0.029
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.572 r_dihedral_angle_3_deg 14.092 r_dihedral_angle_1_deg 6.978 r_lrange_it 6.644 r_lrange_other 6.46 r_dihedral_angle_2_deg 5.98 r_scangle_it 4.921 r_scangle_other 4.92 r_scbond_it 3.235 r_scbond_other 3.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.572 r_dihedral_angle_3_deg 14.092 r_dihedral_angle_1_deg 6.978 r_lrange_it 6.644 r_lrange_other 6.46 r_dihedral_angle_2_deg 5.98 r_scangle_it 4.921 r_scangle_other 4.92 r_scbond_it 3.235 r_scbond_other 3.235 r_mcangle_it 3.135 r_mcangle_other 3.134 r_mcbond_it 2.148 r_mcbond_other 2.146 r_angle_refined_deg 1.775 r_angle_other_deg 0.584 r_nbd_refined 0.198 r_symmetry_nbd_other 0.196 r_nbd_other 0.181 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.179 r_symmetry_xyhbond_nbd_refined 0.152 r_symmetry_nbd_refined 0.132 r_symmetry_nbtor_other 0.088 r_chiral_restr 0.085 r_symmetry_metal_ion_refined 0.046 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2050 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing